Modeling method
Predict target–binder complex cohorts
Co-fold target and binder sequences with Protenix-v2, explicit sampling seeds, checksum-bound structures, per-token PAE, confidence files, and row-level failures.
Method details
Input checks
- 20–2,000 target residues and 10–500 binder residues
- Up to 8 rows in one native cohort
- One to five distinct non-negative sampling seeds
Expected results
- Seed-expanded predicted complexes — One structure and PAE binding per successful row and seed.
- Prediction Artifacts — Checksum-bound mmCIF, full PAE, and confidence evidence.
- Native cohort evidence — Complete model, runtime, seed, per-row status, request, result, and Artifact provenance.
Example result
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